Reconstruction of phylogenetic trees by maximum likelihood

Java re-implementation of Michael Eisen's TreeView

Displays and prints phylogenetic trees

locate and display tandem repeats in DNA sequences

locate and display tandem repeats in DNA sequences (examples)

automate quality and adapter trimming for DNA sequencing

flexible read trimming tool for Illumina NGS data

toolkit to carry out genetic association for multi-category phenotypes

RNA-Seq De novo Assembly

RNA-Seq De novo Assembly common example and testing files

Cave Survey drawing software

genetic variant caller for Ion Torrent sequencing platforms

tiny web map service

build the compacted de Bruijn graph from many complete genomes

error correction algorithm designed for short-reads from NGS

Unicode Tokenizer

Data files for Ucto

Utilities for the UCX messaging library

integrated bioinformatics toolkit

required data for UGENE - integrated bioinformatics toolkit

universal hardware driver for Ettus Research products - host apps

tools for processing UMI RNA-tag data

tools for processing UMI RNA-tag data (examples)

Utility for Nanopore Current Alignment to Large Expanses of DNA

hybrid assembly pipeline for bacterial genomes

hybrid assembly pipeline for bacterial genomes (data package)

high-performance phylogenetic diversity calculations (binaries)

Unihedron Device manager (UDM)

Toolkit for nucleic acid k-mer analysis

Parser for expressions concerning physical values

Powerful units converter with a GUI

Visualization Applet for RNA

annotate a VCF with other VCFs/BEDs/tabixed files

examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files

Collection of tools to work with VCF files

Nucleic acid sequence assembler for very short reads

Example data for the Velvet sequence assembler

Nucleic acid sequence assembler for very short reads, long version

automatically optimise Velvet do novo assembly parameters

Test data for the Velvet sequence assembler

Speeding up the estimation of phylogenetic trees from sequences

2D and 3D scientific plotting application with graphical interface

identify virulence genes in total or partial sequenced isolates of bacteria

example data for virulencefinder

visual servoing library - dataset reference files

Science visualisation workflow toolkit

graphical tool to browse and edit PyTables and HDF5 files

large scale sequence analysis software

library for the computation of the Voronoi diagram

library for the computation of the Voronoi diagram (examples)