Structural variant caller for long sequencing reads

robust and fast clustering method for amplicon-based studies

Resample and co-add together FITS images

Swiss Ephemeris library (basic set of ephemeris files).

assessment of SNPs for their evolutionary advantage

Swiss Ephemeris library (standard set of ephemeris files).

generic indexer for TAB-delimited genome position files

mass spectrometry software for protein identification

low complexity and tandem repeat masker for biosequences

convert Tide Constituent Database (TCD) files

Tcl FITS Extension

Multiple Sequence Alignment

annotated examples for the use of T-Coffee

Generates survex/therion terrain models from SRTM/NASADEM data.

Cave surveying - 2D and 3D drawing software

Cave surveying - 3D viewer for therion models

superimpose macromolecules using maximum likelihood

superimpose macromolecules using maximum likelihood (examples)

Testing Haplotype Effects In Association Studies

3B Microscopy Analysis Software - command-line tool

3B Microscopy Analysis Software - ImageJ plugin

structural variant calling

Gene detection in archea and bacteria

Tilburg Memory Based Learner

Server extensions for Timbl

header only deep learning framework in C++

build vector tilesets from large collections of GeoJSON features

Tk widgets for astronomical imaging and data visualization

structural alignment of proteins

statistical calculations of essentiality of genes or genomic regions

identification of modified nucleotides from raw nanopore sequencing data

Tool for OPerations on Catalogues And Tables

post-processor for TopHat unmapped reads

set of programs implementing The OpenMS Proteomic Pipeline

Conversion utility from pockettopo to therion, for cave surveying

Top-down proteoform identification and characterization (programs)

Top-down proteoform identification and characterization (common data)

transmembrane topology prediction

Application to calculate ramachandran z-scores

Exact combinatorial optimization for Graphical Models

Exact combinatorial optimization for Graphical Models - documentation

bulk submission of chromatogram data to dbEST

Documentation and sample files for trace2dbest

interpretation of DNA Sanger sequencing data

find coding regions within RNA transcript sequences

Runs formatted documents through transformations/translation

helper for transrate

find rho-independent transcription terminators in bacterial genomes

trajectory analyzer and visualizer

Parallelized reconstruction of phylogenetic trees by maximum likelihood