Contents of section "Science" in suite "amber"

octovis

Visualization tool for OctoMap

main
odil

C++11 library for the DICOM standard (application)

main
odin

develop, simulate and run magnetic resonance sequences

main
ogdi-bin

Open Geographic Datastore Interface Library -- utilities

main
openbabel

Chemical toolbox utilities (cli)

main
openbabel-gui

Chemical toolbox utilities (graphical user interface)

main
opencaster

MPEG2 transport stream data generator and packet manipulator

main
openfoam

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

main
openfoam-examples

Open source toolbox for Computational Fluid Dynamics (CFD) - examples

main
openms

package for LC/MS data management and analysis

main
openms-common

package for LC/MS data management and analysis - shared data

main
openmx

package for nano-scale material simulations

main
openmx-data

package for nano-scale material simulations (data)

main
openrocket

Model Rocket Simulator

main
openuniverse

3D Universe Simulator

main
openuniverse-common

3D Universe Simulator data files

main
optgeo

simulator for geometrical optics

main
opticalraytracer

Virtual lens design workshop

main
origami

command-line management tool for Folding @ Home clients

main
orthanc

Lightweight, RESTful DICOM server for medical imaging

main
orthanc-dicomweb

Plugin to extend Orthanc with support of WADO and DICOMweb

main
orthanc-imagej

ImageJ plugin to import images from Orthanc

main
orthanc-mysql

Plugins to use MySQL or MariaDB as a database back-end to Orthanc

main
orthanc-postgresql

Plugins to use PostgreSQL as a database back-end to Orthanc

main
orthanc-webviewer

Web viewer of medical images for Orthanc

main
orthanc-wsi

Whole-slide imaging support for Orthanc (digital pathology)

main
ossim-core

OSSIM core utilities

main
otb-bin

ORFEO Toolbox command line applications

main
otb-bin-qt

ORFEO Toolbox graphical user interface applications

main
otb-testdriver

ORFEO Toolbox library - OTBTestDriver

main
otf-trace

Open Trace Format support library - development files

main
p4vasp

visualization suite for the Vienna Ab-initio Simulation Package (VASP)

main
paje.app

generic visualization tool (Gantt chart and more)

main
pal2nal

converts proteins to genomic DNA alignment

main
paleomix

pipelines and tools for the processing of ancient and modern HTS data

main
paml

Phylogenetic Analysis by Maximum Likelihood (PAML)

main
paraclu

Parametric clustering of genomic and transcriptomic features

main
parafly

parallel command processing using OpenMP

main
paraview

Parallel Visualization Application

main
parsinsert

Parsimonious Insertion of unclassified sequences into phylogenetic trees

main
parsinsert-testdata

Test data for parsinsert

main
parsnp

rapid core genome multi-alignment

main
patman

rapid alignment of short sequences to large databases

main
paw

Physics Analysis Workstation - a graphical analysis program

main
paw++

Physics Analysis Workstation (Lesstif-enhanced version)

main
paw-common

Physics Analysis Workstation (common files)

main
paw-demos

Physics Analysis Workstation examples and tests

main
pbbamtools

processing Pacific Biosciences binary alignment/map files

main
pbbarcode

annotate PacBio sequencing reads with barcode information

main
pbdagcon

sequence consensus using directed acyclic graphs

main