Pacific Biosciences variant and consensus caller
tools for manipulating Pacific Biosciences HDF5 files
genomic structural variation discovery
genome assembly upgrading tool
simulator for PacBio sequencing reads
Preparation of protein structures for electrostatics calculations
Scientific workflow management system for HTCondor
Graphical design of primers for PCR
efficient mapping of short reads with periodic spaced seeds
build and search protein and DNA generalized profiles
phylogenetic analysis with space/time models
PHI test and other tests of recombination
binning/clustering newick trees by topology
package of programs for inferring phylogenies
Phylogenetic estimation using Maximum Likelihood
sample sequence alignment corresponding to phylogeny
simple analyses or modifications on both phylogenetic trees and data matrices
UNIX-style phylogenetic analyses on trees and sequences
Command line tools to manipulate SAM and BAM files
SAT solver with proof and core support
genomic repeat analysis
automated genome assembly improvement and variant detection tool
Profile based Illumina pair-end Reads Simulator
profile basd Illumina pair-end Reads Simulator (example data)
profile basd Illumina pair-end Reads Simulator (profile data)
Script for the automatic testing of R packages
GDAL add-on tools to perform useful raster processing
Plasmid Constellation Network project
Gravitation simulation of planetary bodies
identification of known plasmids from whole-genome sequencing reads
Parallel Local Sequence Alignment Search Tool
Parallel Local Sequence Alignment Search Tool (example data)
medical image reconstruction and registration
whole-genome association analysis toolset
command line handling of JPL ephemeres data
routines for predictions of positions in solar system
Programs for reading and writing parallel NetCDF files
Partial Order Alignment for multiple sequence alignment
population genetic software
adapter trimmer for Oxford Nanopore reads
toolkit for nanopore nucleotide sequencing data
toolkit for nanopore nucleotide sequencing data -- sample datasets
PredictProtein popularity contest
planar partition repair tool
program for speech analysis and synthesis
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
prediction and analysis of protein nuclear localization signals
suite of protein sequence analysis tools
polygon repair tool