viewer for PySPH - framework for Smoothed Particle Hydrodynamics

Data Representation Standard library for antibody and TCR sequences

edit and Hamming distances for biological sequences

Atomistic Machine-learning Package (python 3)

Simulate and fit X-ray and neutron GISAXS -- Python3

VCF parser based on htslib (Python 3)

platform for exploring biological deep-sequencing data

handlig GTF-like sequence-associated interal-annotation

adapter prediction for small RNA sequencing - library

Escript/Finley finite elements Python3 system (with OpenMP)

Escript/Finley finite elements Python3 system (OpenMP + MPI)

wraps command line tools to assess variants in gene sequences

flexible and extensible software library for handling sequence graphs

Work with GFF and GTF files in a flexible database framework

deep learning framework running on Theano or TensorFlow

binary encoding of biological structures (Python 3)

statistics on long biological sequences

Perlin noise for image generation

Open Neural Network Exchange (ONNX) (Python)

generate atomic oligopeptide 3D structure from sequence

Fast, flexible and easy to use probabilistic modelling

access to 2bit files

Biological Expression Language

Python 3 module for quick access to bigBed and bigWig files

PyNLPl is a library for Natural Language Processing (Python 3 version)

Quantum Information Science Kit (Qiskit): IBM Q Provider

Quantum Information Science Kit (Qiskit) for Python 3

scikit-learn compatible neural network library that wraps PyTorch

numerical representation of differences between strings

Data manipulation and transformation for audio signal processing

High-level library to help with training and evaluating in PyTorch

Data loaders and abstractions for text and NLP

Datasets, Transforms and Models specific to Computer Vision

Scalable and Flexible Gradient Boosting (Python3)

Dithered image combination for Python (Test data)

Documentation for Escript/Finley

1D/2D indexing and querying with a pair of genomic coordinates (examples)

interactive editor for scientific Python

QIIME 2 plugin for generating and manipulating alignments

Click-based command line interface for QIIME 2

QIIME 2 plugin to work with adapters in sequence data

QIIME 2 plugin to work with adapters in sequence data

QIIME 2 plugin for demultiplexing of sequence reads

QIIME 2 plugin supporting taxonomic classification

QIIME 2 plugin supporting operations on feature tables

QIIME 2 plugin for working with and visualizing Metadata

QIIME 2 plugin for quality assurance of feature and sequence data

QIIME2 plugin for PHRED-based filtering and trimming

QIIME 2 plugin for machine learning prediction of sample data

QIIME 2 plugin for working with feature taxonomy annotations