Contents of section "GNU R" in suite "dawn"

elpa-ess

Emacs mode for statistical programming and data analysis

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littler

GNU R scripting and command-line front-end -- transition package

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r-base

GNU R statistical computation and graphics system

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r-base-core

GNU R core of statistical computation and graphics system

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r-base-dev

GNU R installation of auxiliary GNU R packages

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r-bioc-affxparser

Affymetrix File Parsing SDK

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r-bioc-affy

BioConductor methods for Affymetrix Oligonucleotide Arrays

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r-bioc-affyio

BioConductor tools for parsing Affymetrix data files

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r-bioc-alabaster.schemas

Schemas for the Alabaster Framework

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r-bioc-all

Bioconductor data package used by several bioc tools

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r-bioc-altcdfenvs

BioConductor alternative CDF environments

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r-bioc-annotate

BioConductor annotation for microarrays

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r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor

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r-bioc-annotationhub

GNU R client to access AnnotationHub resources

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r-bioc-aroma.light

BioConductor methods normalization and visualization of microarray data

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r-bioc-basilisk

freezing Python dependencies inside Bioconductor packages

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r-bioc-basilisk.utils

Bioconductor basilisk installation utilities

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r-bioc-beachmat

I/O for several formats storing matrix data

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r-bioc-biobase

base functions for Bioconductor

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r-bioc-biocbaseutils

General utility functions for developing Bioconductor packages

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r-bioc-bioccheck

Bioconductor-specific package checks

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r-bioc-biocfilecache

GNU R management of files across sessions

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r-bioc-biocgenerics

generic functions for Bioconductor

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r-bioc-biocio

standard input and output for Bioconductor packages

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r-bioc-biocneighbors

Nearest Neighbor Detection for Bioconductor Packages

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r-bioc-biocparallel

BioConductor facilities for parallel evaluation

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r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages

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r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents

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r-bioc-biocversion

set the appropriate version of Bioconductor packages

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r-bioc-biocviews

Categorized views of R package repositories

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r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

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r-bioc-biostrings

GNU R string objects representing biological sequences

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r-bioc-bladderbatch

GNU R bladder gene expression data illustrating batch effects

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r-bioc-bluster

Clustering Algorithms for Bioconductor

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r-bioc-chemminer

Cheminformatics Toolkit for R

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r-bioc-complexheatmap

make complex heatmaps using GNU R

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r-bioc-consensusclusterplus

GNU R determining cluster count and membership

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r-bioc-ctc

Cluster and Tree Conversion

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r-bioc-decontam

identify contaminants in marker-gene and metagenomics sequencing sata

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r-bioc-decoupler

infer biological activities from omics data

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r-bioc-delayedarray

BioConductor delayed operations on array-like objects

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r-bioc-delayedmatrixstats

Functions on Rows and Columns of 'DelayedMatrix' Objects

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r-bioc-densvis

density-preserving data visualization via non-linear dimensionality reduction

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r-bioc-deseq

GNU R differential gene expression analysis

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r-bioc-dir.expiry

Bioconductor managing expiration for cache directories

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r-bioc-dirichletmultinomial

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

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r-bioc-dnacopy

R package: DNA copy number data analysis

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r-bioc-dupradar

BioConductor assessment of duplication rates in RNA-Seq datasets

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r-bioc-ebseq

R package for RNA-Seq Differential Expression Analysis

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r-bioc-edger

Empirical analysis of digital gene expression data in R

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