Contents of section "GNU R" in suite "landing"

r-bioc-delayedmatrixstats

Functions on Rows and Columns of 'DelayedMatrix' Objects

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r-bioc-densvis

density-preserving data visualization via non-linear dimensionality reduction

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r-bioc-deseq

GNU R differential gene expression analysis

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r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis

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r-bioc-destiny

GNU R diffusion maps

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r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq

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r-bioc-dir.expiry

Bioconductor managing expiration for cache directories

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r-bioc-dirichletmultinomial

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

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r-bioc-dnacopy

R package: DNA copy number data analysis

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r-bioc-drimseq

Differential transcript usage and tuQTL analyses with

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r-bioc-dupradar

BioConductor assessment of duplication rates in RNA-Seq datasets

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r-bioc-ebseq

R package for RNA-Seq Differential Expression Analysis

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r-bioc-edaseq

GNU R exploratory data analysis and normalization for RNA-Seq

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r-bioc-edger

Empirical analysis of digital gene expression data in R

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r-bioc-eir

Accelerated similarity searching of small molecules

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r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database

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r-bioc-experimenthub

BioConductor client to access ExperimentHub resources

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r-bioc-fishpond

Differential transcript and gene expression with inferential replicates

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r-bioc-fmcsr

GNU R mismatch tolerant maximum common substructure searching

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r-bioc-genefilter

methods for filtering genes from microarray experiments

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r-bioc-geneplotter

R package of functions for plotting genomic data

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r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers

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r-bioc-genomeinfodbdata

BioConductor species and taxonomy ID look up tables

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r-bioc-genomicalignments

BioConductor representation and manipulation of short genomic alignments

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r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations

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r-bioc-genomicfiles

Distributed computing by file or by range

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r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals

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r-bioc-geoquery

Get data from NCBI Gene Expression Omnibus (GEO)

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r-bioc-go.db

annotation maps describing the entire Gene Ontology

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r-bioc-golubesets

exprSets for golub leukemia data

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r-bioc-gosemsim

GO-terms semantic similarity measures

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r-bioc-graph

handle graph data structures for BioConductor

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r-bioc-grohmm

GRO-seq Analysis Pipeline

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r-bioc-gseabase

Gene set enrichment data structures and methods

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r-bioc-gsvadata

Data employed in the vignette of the GSVA package

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r-bioc-gviz

Plotting data and annotation information along genomic coordinates

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r-bioc-gypsum

Interface to the gypsum REST API

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r-bioc-hgu95a.db

Affymetrix Affymetrix HG_U95A Array annotation data (chip

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r-bioc-hsmmsinglecell

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts

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r-bioc-htsfilter

GNU R filter replicated high-throughput transcriptome sequencing data

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r-bioc-hypergraph

BioConductor hypergraph data structures

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r-bioc-impute

Imputation for microarray data

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r-bioc-interactivedisplaybase

base package for enabling powerful shiny web displays of Bioconductor objects

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r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges

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r-bioc-keggrest

GNU R client-side REST access to KEGG

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r-bioc-limma

linear models for microarray data

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r-bioc-makecdfenv

BioConductor CDF Environment Maker

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r-bioc-matrixgenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

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r-bioc-megadepth

BioCOnductor BigWig and BAM related utilities

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r-bioc-mergeomics

Integrative network analysis of omics data

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