infer biological activities from omics data

DegNorm: degradation normalization for RNA-seq data

BioConductor report of DEG analysis

BioConductor delayed operations on array-like objects

Functions on Rows and Columns of 'DelayedMatrix' Objects

Cell type-specific deconvolution of heterogeneous tumor samples

density-preserving data visualization via non-linear dimensionality reduction

GNU R differential gene expression analysis

R package for RNA-Seq Differential Expression Analysis

GNU R diffusion maps

GNU R inference of differential exon usage in RNA-Seq

Bioconductor managing expiration for cache directories

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

R package: DNA copy number data analysis

Differential transcript usage and tuQTL analyses with

BioConductor utilities for handling single-cell droplet data

Bioconductor dispersion shrinkage for sequencing data

BioConductor assessment of duplication rates in RNA-Seq datasets

R package for RNA-Seq Differential Expression Analysis

GNU R exploratory data analysis and normalization for RNA-Seq

Empirical analysis of digital gene expression data in R

Accelerated similarity searching of small molecules

GNU R utilities to create and use an Ensembl based annotation database

BioConductor client to access ExperimentHub resources

Differential transcript and gene expression with inferential replicates

GNU R mismatch tolerant maximum common substructure searching

methods for filtering genes from microarray experiments

GNU R lengths of mRNA transcripts for a number of genomes

R package of functions for plotting genomic data

BioConductor utilities for manipulating chromosome identifiers

BioConductor species and taxonomy ID look up tables

BioConductor representation and manipulation of short genomic alignments

GNU R tools for making and manipulating transcript centric annotations

Distributed computing by file or by range

BioConductor representation and manipulation of genomic intervals

Get data from NCBI Gene Expression Omnibus (GEO)

Visualization tools for genomic data

GNU R fit a Gamma-Poisson generalized linear model

annotation maps describing the entire Gene Ontology

exprSets for golub leukemia data

GO-terms semantic similarity measures

GNU R gene ontology analyser for RNA-seq and other length biased data

handle graph data structures for BioConductor

GRO-seq Analysis Pipeline

Gene set enrichment data structures and methods

Gene Set Variation Analysis for microarray and RNA-seq data

Data employed in the vignette of the GSVA package

Plotting data and annotation information along genomic coordinates

Interface to the gypsum REST API

HDF5 backend for DelayedArray objects