Contents of section "Science" in suite "amber"

prepair-data

polygon repair tool -- example data

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prime-phylo

bayesian estimation of gene trees taking the species tree into account

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primer3

tool to design flanking oligo nucleotides for DNA amplification

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primer3-examples

tool to design flanking oligo nucleotides for DNA amplification (examples)

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proalign

Probabilistic multiple alignment program

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probabel

Toolset for Genome-Wide Association Analysis

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probabel-examples

Example files for ProbABEL

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probalign

multiple sequence alignment using partition function posterior probabilities

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probcons

PROBabilistic CONSistency-based multiple sequence alignment

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probcons-extra

Extra programs from the probcons package

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proda

multiple alignment of protein sequences

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prodigal

Microbial (bacterial and archaeal) gene finding program

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profbval

predictor of flexible/rigid protein residues from sequence

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profisis

prediction of protein-protein interaction sites from sequence

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profnet-bval

neural network architecture for profbval

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profnet-chop

neural network architecture for profchop

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profnet-con

neural network architecture for profcon

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profnet-isis

neural network architecture for profisis

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profnet-md

neural network architecture for metadisorder

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profnet-norsnet

neural network architecture for norsnet

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profnet-prof

neural network architecture for profacc

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profnet-snapfun

neural network architecture for snapfun

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profphd

secondary structure and solvent accessibility predictor

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profphd-net

neural network architecture for profphd

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profphd-utils

profphd helper utilities convert_seq and filter_hssp

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proftmb

per-residue prediction of bacterial transmembrane beta barrels

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progressivemauve

multiple genome alignment algorithms

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proj-bin

Cartographic projection library (tools)

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proteinortho

Detection of (Co-)orthologs in large-scale protein analysis

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prottest

selection of best-fit models of protein evolution

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pscan-chip

ChIP-based identifcation of TF binding sites

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pscan-chip-data

auxiliary data for PScan-ChIP

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pscan-tfbs

search for transcription factor binding sites

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psfex

Point Spread Function model extractor

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psi3

Quantum Chemical Program Suite

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psi4

Quantum Chemical Program Suite

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psi4-data

Quantum Chemical Program Suite (data files)

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psortb

bacterial localization prediction tool

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psychtoolbox-3-common

toolbox for vision research -- arch/interpreter independent part

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psychtoolbox-3-lib

toolbox for vision research -- arch-specific parts

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purify

Collection of routines for radio interferometric imaging

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pyfai

Fast Azimuthal Integration scripts

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pyfr

flux reconstruction in Python

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pymca

Applications and toolkit for X-ray fluorescence analysis -- scripts

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pymca-data

Architecture independent data files for PyMca

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pymoctool

Python Multi-Order Coverage maps tool for Virtual Observatory

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pymol

Molecular Graphics System

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pymol-data

data files for PyMOL

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pysatellites

simulates the launching of satellites

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pythia8-data

PYTHIA8 data files

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