PHI test and other tests of recombination
binning/clustering newick trees by topology
package of programs for inferring phylogenies
Fast and Accurate Estimation of Evolutionary Distances
Phylogenetic estimation using Maximum Likelihood
sample sequence alignment corresponding to phylogeny
simple analyses or modifications on both phylogenetic trees and data matrices
UNIX-style phylogenetic analyses on trees and sequences
Command line tools to manipulate SAM and BAM files
lossless compression of Nanopore files
SAT solver with proof and core support
pipeline for checkpointed and distributed RNA-seq analyses
genomic repeat analysis
software for finding CRISPR repeats
automated genome assembly improvement and variant detection tool
Collection of tools to annotate genomes using long read transcriptomics data
Examples and test data for pinfish
software pipeline for performing genome wide association studies
Profile based Illumina pair-end Reads Simulator
profile basd Illumina pair-end Reads Simulator (example data)
profile basd Illumina pair-end Reads Simulator (profile data)
Identifies gene fusions in RNA sequencing data
Script for the automatic testing of R packages
GDAL add-on tools to perform useful raster processing
Plasmid Constellation Network project
Gravitation simulation of planetary bodies
mapping-based, assembly-assisted plasmid identification tool
identification of known plasmids from whole-genome sequencing reads
Parallel Local Sequence Alignment Search Tool
Parallel Local Sequence Alignment Search Tool (example data)
medical image reconstruction and registration
whole-genome association analysis toolset
command line handling of JPL ephemeres data
routines for predictions of positions in solar system
Programs for reading and writing parallel NetCDF files
Partial Order Alignment for multiple sequence alignment
population genetic software
adapter trimmer for Oxford Nanopore reads
toolkit for nanopore nucleotide sequencing data
toolkit for nanopore nucleotide sequencing data -- sample datasets
phylogenetic placement and downstream analysis
PredictProtein popularity contest
program for speech analysis and synthesis
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
prediction and analysis of protein nuclear localization signals
bayesian estimation of gene trees taking the species tree into account
tool to design flanking oligo nucleotides for DNA amplification
tool to design flanking oligo nucleotides for DNA amplification (examples)