auxiliary data for PScan-ChIP

search for transcription factor binding sites

toolbox for vision research -- arch/interpreter independent part

toolbox for vision research -- arch-specific parts

Extract sequence from a fasta or fastq

Collection of routines for radio interferometric imaging

computes metrics and generates Interactive QC plots

installs data from the Ensembl genome database

fast random access to sequences from FASTA/Q file - command

Applications and toolkit for X-ray fluorescence analysis -- scripts

Architecture independent data files for PyMca

Python Multi-Order Coverage maps tool for Virtual Observatory

OHSDI OMOP Common Data Model tools

simulates the launching of satellites

Data Representation Standard library for antibody and TCR sequences

edit and Hamming distances for biological sequences

library to enable flexible, scalable operations on genomic interval dataframes

prepare CIF files for electronic structure calculations

cython wrapper for khash-sets/maps, efficient implementation of isin and unique

VCF parser based on htslib (Python 3)

DICOM to NIfTI conversion - python3 package

platform for exploring biological deep-sequencing data

handlig GTF-like sequence-associated interal-annotation

adapter prediction for small RNA sequencing - library

Flexible and powerful tensor operations for readable code

Escript/Finley finite elements Python3 system (OpenMP + MPI)

(OpenMP + MPI)

wraps command line tools to assess variants in gene sequences

flexible and extensible software library for handling sequence graphs

Work with GFF and GTF files in a flexible database framework

parser for gene transfer format (aka GFF2)

is a data integration algorithm

Jupyter Sphinx Extension - Python3

binary encoding of biological structures (Python 3)

Python GPU framework for alchemical free energy calculations (Python 3)

Navigation tool for ARPES data (Python 3)

Perlin noise for image generation

Open Neural Network Exchange (ONNX) (Python)

tools for manipulating and editing PDB files (Python 3 package)

generate atomic oligopeptide 3D structure from sequence

Fast, flexible and easy to use probabilistic modelling

Protein Binding Affinity Prediction (Python 3)

access to 2bit files

Python 3 module for quick access to bigBed and bigWig files

Image Tool for multidimensional analysis (Python 3)

Python implementation of the multistate Bennett acceptance ratio (MBAR)

PyNLPl is a library for Natural Language Processing (Python 3 version)

modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures

numerical representation of differences between strings

Moments for truncated multivariate normal distributions for Python